Affiliation: Max Planck Institute for Molecular Genetics
- Genome wide identification and classification of alternative splicing based on EST dataS Gupta
Computational Molecular Biology Max Planck Institute for Molecular Genetics, Ihnestrasse 73, D 14195 Berlin, Germany
Bioinformatics 20:2579-85. 2004..High quality exon-intron boundaries are used to predict constitutive and alternative splicing ranked by confidence values, aiming to facilitate large-scale analysis of alternative splicing and splicing in general...
- Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicingShobhit Gupta
Max Planck Institute for Molecular Genetics, Ihnestr, 73, D 14195 Berlin, Germany
BMC Genomics 5:72. 2004..However, the limited number of tissues represented in the EST data as well as the different cDNA construction protocols may influence the predictive capacity of ESTs to unravel tissue-specifically expressed transcripts...
- T-STAG: resource and web-interface for tissue-specific transcripts and genesShobhit Gupta
Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Ihnestrasse 63 73, D 14195 Berlin, Germany
Nucleic Acids Res 33:W654-8. 2005..The user-friendly interface of T-STAG offers a platform for comprehensive analysis of tissue and/or tumor-specific expression patterns revealed by the EST data. T-STAG is freely accessible at http://tstag.molgen.mpg.de...
- Quantifying similarity between motifsShobhit Gupta
Department of Genome Sciences, University of Washington, 1705 NE Pacific Street, Box 355065, Seattle, WA 98195, USA
Genome Biol 8:R24. 2007..Experimental simulations demonstrate the accuracy of Tomtom's E values and its effectiveness in finding similar motifs...