Hidenori Tani

Summary

Affiliation: Advanced Industrial Science and Technology (AIST)
Location: Tsukuba, Japan

Publications

  1. ncbi Quantitative method for specific nucleic acid sequences using competitive polymerase chain reaction with an alternately binding probe
    Hidenori Tani
    Department of Chemical Engineering, Waseda University, 3 4 1 Ohkubo, Shinjuku ku, Tokyo 169 8555, Japan
    Anal Chem 79:974-9. 2007
  2. doi Cholesterol sulfate as a potential inhibitor of hepatitis C virus NS3 helicase
    Atsushi Furuta
    Department of Life Science and Medical Bioscience, Waseda University, Shinjuku ku, Tokyo, Japan
    J Enzyme Inhib Med Chem 29:223-9. 2014
  3. pmc The RNA degradation pathway regulates the function of GAS5 a non-coding RNA in mammalian cells
    Hidenori Tani
    National Institute of Advanced Industrial Science and Technology AIST, Tsukuba, Ibaraki, Japan
    PLoS ONE 8:e55684. 2013
  4. doi Psammaplin A inhibits hepatitis C virus NS3 helicase
    Kazi Abdus Salam
    Radioisotope Center, The University of Tokyo, 2 11 16 Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
    J Nat Med 67:765-72. 2013
  5. pmc Inhibition of both protease and helicase activities of hepatitis C virus NS3 by an ethyl acetate extract of marine sponge Amphimedon sp
    Yuusuke Fujimoto
    Department of Microbiology, Division of Medicine, Graduate School of Medicine and Engineering, University of Yamanashi, Yamanashi, Japan
    PLoS ONE 7:e48685. 2012
  6. pmc Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability
    Hidenori Tani
    Radioisotope Center, University of Tokyo, Tokyo, Japan
    RNA Biol 9:1370-9. 2012
  7. pmc Genome-wide technology for determining RNA stability in mammalian cells: historical perspective and recent advantages based on modified nucleotide labeling
    Hidenori Tani
    Research Institute for Environmental Management Technology, National Institute of Advanced Industrial Science and Technology AIST, Tsukuba, Ibaraki, Japan
    RNA Biol 9:1233-8. 2012
  8. pmc Inhibition of hepatitis C virus replication and viral helicase by ethyl acetate extract of the marine feather star Alloeocomatella polycladia
    Atsuya Yamashita
    Department of Microbiology, Division of Medicine, Graduate School of Medicine and Engineering, University of Yamanashi, 1110 Shimokato, Chuo shi, Yamanashi 409 3898, Japan
    Mar Drugs 10:744-61. 2012
  9. pmc Identification and characterization of novel genotoxic stress-inducible nuclear long noncoding RNAs in mammalian cells
    Rena Mizutani
    Radioisotope Center, The University of Tokyo, Tokyo, Japan
    PLoS ONE 7:e34949. 2012
  10. doi Inhibition of hepatitis C virus NS3 helicase by manoalide
    Kazi Abdus Salam
    Radioisotope Center, The University of Tokyo, 2 11 16 Yayoi, Tokyo 113 0032, Japan
    J Nat Prod 75:650-4. 2012

Collaborators

Detail Information

Publications23

  1. ncbi Quantitative method for specific nucleic acid sequences using competitive polymerase chain reaction with an alternately binding probe
    Hidenori Tani
    Department of Chemical Engineering, Waseda University, 3 4 1 Ohkubo, Shinjuku ku, Tokyo 169 8555, Japan
    Anal Chem 79:974-9. 2007
    ..Moreover, ABC-PCR was able to correctly quantify DNA even when PCR was inhibited by humic acid; therefore, this method will enable accurate DNA quantification for biological samples that contain PCR inhibitors...
  2. doi Cholesterol sulfate as a potential inhibitor of hepatitis C virus NS3 helicase
    Atsushi Furuta
    Department of Life Science and Medical Bioscience, Waseda University, Shinjuku ku, Tokyo, Japan
    J Enzyme Inhib Med Chem 29:223-9. 2014
    ..Our findings suggest that CS may inhibit NS3 helicase not by abolishing the other NS3 activities but by inducing conformational changes via interaction with possible allosteric sites of NS3...
  3. pmc The RNA degradation pathway regulates the function of GAS5 a non-coding RNA in mammalian cells
    Hidenori Tani
    National Institute of Advanced Industrial Science and Technology AIST, Tsukuba, Ibaraki, Japan
    PLoS ONE 8:e55684. 2013
    ..Taken together, we found that the RNA degradation pathway can regulate the function of the GAS5 ncRNA in mammalian cells...
  4. doi Psammaplin A inhibits hepatitis C virus NS3 helicase
    Kazi Abdus Salam
    Radioisotope Center, The University of Tokyo, 2 11 16 Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
    J Nat Med 67:765-72. 2013
    ..1 and 6.3 μM in subgenomic replicon cells derived from genotypes 1b and 2a, respectively. We postulate that psammaplin A is a potential anti-viral agent through the inhibition of ATPase, RNA binding and helicase activities of NS3...
  5. pmc Inhibition of both protease and helicase activities of hepatitis C virus NS3 by an ethyl acetate extract of marine sponge Amphimedon sp
    Yuusuke Fujimoto
    Department of Microbiology, Division of Medicine, Graduate School of Medicine and Engineering, University of Yamanashi, Yamanashi, Japan
    PLoS ONE 7:e48685. 2012
    ..Treatment with the extract of Amphimedon sp. inhibited RNA-binding ability but not ATPase activity. These results suggest that the novel compound(s) included in Amphimedon sp. can target the protease and helicase activities of HCV NS3...
  6. pmc Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability
    Hidenori Tani
    Radioisotope Center, University of Tokyo, Tokyo, Japan
    RNA Biol 9:1370-9. 2012
    ..Many UPF1 targets in this study were newly identified. This study clearly demonstrates that direct determination of RNA stability is a powerful approach for identifying targets of RNA degradation factors...
  7. pmc Genome-wide technology for determining RNA stability in mammalian cells: historical perspective and recent advantages based on modified nucleotide labeling
    Hidenori Tani
    Research Institute for Environmental Management Technology, National Institute of Advanced Industrial Science and Technology AIST, Tsukuba, Ibaraki, Japan
    RNA Biol 9:1233-8. 2012
    ..This review describes the recent progress of experimental procedures for measuring RNA stability...
  8. pmc Inhibition of hepatitis C virus replication and viral helicase by ethyl acetate extract of the marine feather star Alloeocomatella polycladia
    Atsuya Yamashita
    Department of Microbiology, Division of Medicine, Graduate School of Medicine and Engineering, University of Yamanashi, 1110 Shimokato, Chuo shi, Yamanashi 409 3898, Japan
    Mar Drugs 10:744-61. 2012
    ..polycladia can inhibit HCV replication by suppressing the helicase activity of HCV NS3. This study may present a new approach toward the development of a novel therapy for chronic hepatitis C...
  9. pmc Identification and characterization of novel genotoxic stress-inducible nuclear long noncoding RNAs in mammalian cells
    Rena Mizutani
    Radioisotope Center, The University of Tokyo, Tokyo, Japan
    PLoS ONE 7:e34949. 2012
    ....
  10. doi Inhibition of hepatitis C virus NS3 helicase by manoalide
    Kazi Abdus Salam
    Radioisotope Center, The University of Tokyo, 2 11 16 Yayoi, Tokyo 113 0032, Japan
    J Nat Prod 75:650-4. 2012
    ..Taken together, we conclude that 1 inhibits the ATPase, RNA binding, and helicase activities of NS3 by targeting the helicase core domain conserved in both HCV NS3 and DHX36/RHAU...
  11. pmc Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals
    Hidenori Tani
    Radioisotope Center, The University of Tokyo, 2 11 16 Yayoi, Bunkyo ku, Tokyo, Japan
    Genome Res 22:947-56. 2012
    ..We propose that the strategy of monitoring RNA half-life will provide a powerful tool for investigating hitherto functionally uncharacterized regulatory RNAs...
  12. doi Quantitative detection of chloroethene-reductive bacteria Dehalococcoides spp. using alternately binding probe competitive Polymerase Chain Reaction
    Ryo Miyata
    Institute for Biological Resources and Functions, National Institute of Advanced Industrial Science and Technology AIST, Central 6, Tsukuba, Ibaraki, Japan
    Mol Cell Probes 24:131-7. 2010
    ..in soil and groundwater samples was successfully quantified using ABC-PCR. In conclusion, ABC-PCR is useful for the quantification of Dehalococcoides spp. populations and dynamics at bioremediation sites...
  13. doi Universal quenching probe system: flexible, specific, and cost-effective real-time polymerase chain reaction method
    Hidenori Tani
    Department of Life Science and Medical Bio Science, Waseda University, 2 2 Wakamatsu cho, Shinjuku ku, Tokyo 162 8480, Japan
    Anal Chem 81:5678-85. 2009
    ..Furthermore, this method is also applicable to single-nucleotide polymorphism (SNP) genotyping...
  14. ncbi Real-time reverse transcription loop-mediated isothermal amplification for rapid and simple quantification of WT1 mRNA
    Soji Morishita
    Department of Life Science and Medical Bio Science, Waseda University, 2 2 Wakamatsu cho, Shinjuku ku, Tokyo, Japan
    Clin Biochem 42:515-20. 2009
    ..This study developed a novel MRD monitoring method targeting Wilms' tumor gene (WT1) mRNA using reverse transcription loop-mediated isothermal amplification (RT-LAMP)...
  15. doi High-throughput screening assay of hepatitis C virus helicase inhibitors using fluorescence-quenching phenomenon
    Hidenori Tani
    Department of Life Science and Medical Bio Science, Waseda University, 2 2 Wakamatsu cho, Shinjuku ku, Tokyo 162 8480, Japan
    Biochem Biophys Res Commun 379:1054-9. 2009
    ..Furthermore, we applied this assay to the screening for NS3 helicase inhibitors from cell extracts of microorganisms, and found several cell extracts containing potential inhibitors...
  16. doi Estimation of single-nucleotide polymorphism allele frequency by alternately binding probe competitive polymerase chain reaction
    Naohiro Noda
    Institute for Biological Resources and Functions, National Institute of Advanced Industrial Science and Technology AIST, 1 1 1 Higashi, Tsukuba, Ibaraki 305 8566, Japan
    Anal Chim Acta 608:211-6. 2008
    ..When the allele frequencies were more than 5%, the relative standard deviations (R.S.D.s) of ABC-PCR were less than 20%. Moreover, we also confirmed that this method was applicable to SNP genotyping...
  17. ncbi Calibration-curve-free quantitative PCR: a quantitative method for specific nucleic acid sequences without using calibration curves
    Hidenori Tani
    Department of Chemical Engineering, Waseda University, Shinjuku ku, Tokyo 169 8555, Japan
    Anal Biochem 369:105-11. 2007
    ..This method will be particularly useful for rapid field tests of the specific gene contamination in samples...
  18. ncbi Technique for quantitative detection of specific DNA sequences using alternately binding quenching probe competitive assay combined with loop-mediated isothermal amplification
    Hidenori Tani
    Department of Chemical Engineering, Waseda University, 3 4 1 Ohkubo, Shinjuku ku, Tokyo 169 8555, Japan
    Anal Chem 79:5608-13. 2007
    ....
  19. ncbi Quantification of genetically modified soybean by quenching probe polymerase chain reaction
    Hidenori Tani
    Department of Chemical Engineering, Waseda University, Shinjuku ku, Tokyo 169 8555, Japan
    J Agric Food Chem 53:2535-40. 2005
    ..When GM soybean content was 0.5% or more, the relative standard deviations of QProbe-PCR were less than 20%. QProbe-PCR is sensitive enough to monitor labeling systems and has acceptable levels of accuracy and precision...
  20. doi Genome-wide gene expression analysis of mouse embryonic stem cells exposed to p-dichlorobenzene
    Hidenori Tani
    Environmental Management Research Institute, National Institute of Advanced Industrial Science and Technology AIST, 16 1 Onogawa, Tsukuba, Ibaraki 305 8569, Japan Electronic address
    J Biosci Bioeng 122:329-33. 2016
    ..Moreover, our results indicate that three novel lncRNAs (Snora41, Gm19947, and Scarna3a) in mESCs respond to p-DCB exposure. We propose that these lncRNAs have the potential to be surrogate indicators of p-DCB responses in mESCs. ..
  21. doi Rapid monitoring of RNA degradation activity in vivo for mammalian cells
    Hidenori Tani
    Environmental Management Research Institute, National Institute of Advanced Industrial Science and Technology AIST, 16 1 Onogawa, Tsukuba, Ibaraki 305 8569, Japan Electronic address
    J Biosci Bioeng . 2016
    ..We propose that this assay will be useful for monitoring cellular toxicity in high-throughput applications...
  22. doi Development of cytotoxicity-sensitive human cells using overexpression of long non-coding RNAs
    Hidenori Tani
    Research Institute for Environmental Management Technology, National Institute of Advanced Industrial Science and Technology AIST, 16 1 Onogawa, Tsukuba, Ibaraki 305 8569, Japan Electronic address
    J Biosci Bioeng 119:604-8. 2015
    ..We propose a method for highly sensitive biosensors using overexpression of lncRNAs that can potentially measure the cytotoxicity signals of various environmental stresses. ..
  23. doi Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response
    Hidenori Tani
    Research Institute for Environmental Management Technology, National Institute of Advanced Industrial Science and Technology AIST, 16 1, Onogawa, Tsukuba, Ibaraki 305 8569, Japan Electronic address
    Biochem Biophys Res Commun 439:547-51. 2013
    ..We propose that these long ncRNAs have the potential to be surrogate indicators of cellular stress responses...