David Jackson

Summary

Affiliation: Cold Spring Harbor Laboratory
Country: USA

Publications

  1. ncbi request reprint Control of phyllotaxy by the cytokinin-inducible response regulator homologue ABPHYL1
    Anna Giulini
    Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, New York 11724, USA
    Nature 430:1031-4. 2004
  2. pmc A novel cell-to-cell trafficking assay indicates that the KNOX homeodomain is necessary and sufficient for intercellular protein and mRNA trafficking
    Jae Yean Kim
    Division of Applied Life Science BK21 program, Environmental Biotechnology National Core Research Center, PMBBRC, Gyeongsang National University, Jinju 660 701, Korea
    Genes Dev 19:788-93. 2005
  3. doi request reprint Dual functions of the KNOTTED1 homeodomain: sequence-specific DNA binding and regulation of cell-to-cell transport
    Nathalie Bolduc
    Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA
    Sci Signal 1:pe28. 2008
  4. doi request reprint Fluorescent protein marker lines in maize: generation and applications
    Qingyu Wu
    Cold Spring Harbor Laboratory, NY, USA
    Int J Dev Biol 57:535-43. 2013
  5. pmc A fluorometric assay for trehalose in the picomole range
    Petronia Carillo
    Dipartimento di Scienze e Tecnologie Ambientali Biologiche e Farmaceutiche, Seconda Universita degli Studi di Napoli, Via Vivaldi 43, I 81100, Caserta, Italy
    Plant Methods 9:21. 2013
  6. ncbi request reprint Dispatch. Intercellular signaling: an elusive player steps forth
    David Jackson
    Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA
    Curr Biol 13:R349-50. 2003
  7. pmc Studies of aberrant phyllotaxy1 mutants of maize indicate complex interactions between auxin and cytokinin signaling in the shoot apical meristem
    Byeong Ha Lee
    Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
    Plant Physiol 150:205-16. 2009
  8. doi request reprint Chaperonins facilitate KNOTTED1 cell-to-cell trafficking and stem cell function
    Xianfeng Morgan Xu
    Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
    Science 333:1141-4. 2011
  9. doi request reprint Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus
    Peter Bommert
    Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA
    Nat Genet 45:334-7. 2013
  10. doi request reprint Grass meristems I: shoot apical meristem maintenance, axillary meristem determinacy and the floral transition
    Michael Pautler
    Cold Spring Harbor Laboratory, 1 Bungtown Rd, Cold Spring Harbor, NY 11724, USA
    Plant Cell Physiol 54:302-12. 2013

Collaborators

  • Jae Yean Kim
  • Namiko Satoh-Nagasawa
  • Qingyu Wu
  • Byeong Ha Lee
  • Doreen Ware
  • Andrea Gallavotti
  • Yan Yang
  • Jing Wang
  • Michelle Cilia
  • Henrik Jonsson
  • Erich Grotewold
  • Yoselin Benitez-Alfonso
  • Hitoshi Sakakibara
  • Zhenyu Xuan
  • Hiro-Yuki Hirano
  • S Hake
  • Christophe Liseron-Monfils
  • Peter Bommert
  • Michael Pautler
  • Andrea L Eveland
  • Alexander Goldshmidt
  • Byoung Il Je
  • Fang Yang
  • Hajime Sakai
  • Xianfeng Morgan Xu
  • Erik Vollbrecht
  • Robert Meeley
  • Mai Komatsu
  • Petronia Carillo
  • Jong Jin Han
  • China Lunde
  • Stacy L DeBlasio
  • Nathalie Bolduc
  • Andrew Craig
  • Guo Wei Tian
  • Anna Giulini
  • Madelaine Bartlett
  • Angela Hay
  • Edgar Demesa Arevalo
  • Jérémy Gruel
  • Young Koung Lee
  • Victor Llaca
  • Huyen Thanh Bui
  • Robyn Johnston
  • Allison Kolbe
  • Therese LaRue
  • Rebecca Weeks
  • Erica Unger-Wallace
  • Susumu Hiraga
  • Michael W Lewis
  • Sunita Kumari
  • Zhenjun Chen
  • Andrew Olson
  • Kengo Morohashi
  • Oliver E Bläsing
  • John Edward Lunn
  • Regina Feil
  • Wakana Tanaka
  • Yves Gibon
  • Mark Stitt
  • Namiko Satoh Nagasawa
  • Robert Martienssen
  • Nisha Hariharan
  • Philippa G M Borrill
  • Anne W Sylvester
  • Sandra Meyer
  • Mary Beatty
  • Jeremy Nicholson
  • Janice Nickson
  • James Sidaway
  • Robert Tonge
  • Ian Wilson
  • Elaine Holmes
  • Rachel Rowlinson
  • Terry Orton
  • Judith Nardmann
  • Mark Running
  • Wolfgang Werr
  • Seung Y Rhee
  • Shijun Li
  • Amitabh Mohanty
  • Brigitte Paap
  • Natasha V Raikhel
  • S Narasimha Chary
  • David Ehrhardt
  • Charles D Kopec
  • Jianxiong Li
  • Vitaly Citovsky
  • Georgia Drakakaki
  • Naomi Ori

Detail Information

Publications32

  1. ncbi request reprint Control of phyllotaxy by the cytokinin-inducible response regulator homologue ABPHYL1
    Anna Giulini
    Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, New York 11724, USA
    Nature 430:1031-4. 2004
    ..We propose that ABPH1 controls phyllotactic patterning by negatively regulating the cytokinin-induced expansion of the shoot meristem, thereby limiting the space available for primordium initiation at the apex...
  2. pmc A novel cell-to-cell trafficking assay indicates that the KNOX homeodomain is necessary and sufficient for intercellular protein and mRNA trafficking
    Jae Yean Kim
    Division of Applied Life Science BK21 program, Environmental Biotechnology National Core Research Center, PMBBRC, Gyeongsang National University, Jinju 660 701, Korea
    Genes Dev 19:788-93. 2005
    ..We show that the KNOX homeodomain (HD) is necessary and sufficient for intercellular trafficking, identifying a novel function for the HD as the minimal sequence required for trafficking of KN1 and its associated mRNA...
  3. doi request reprint Dual functions of the KNOTTED1 homeodomain: sequence-specific DNA binding and regulation of cell-to-cell transport
    Nathalie Bolduc
    Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA
    Sci Signal 1:pe28. 2008
    ..Therefore, KN1 has multiple potential cellular addresses, each of which is conferred by its homeodomain...
  4. doi request reprint Fluorescent protein marker lines in maize: generation and applications
    Qingyu Wu
    Cold Spring Harbor Laboratory, NY, USA
    Int J Dev Biol 57:535-43. 2013
    ....
  5. pmc A fluorometric assay for trehalose in the picomole range
    Petronia Carillo
    Dipartimento di Scienze e Tecnologie Ambientali Biologiche e Farmaceutiche, Seconda Universita degli Studi di Napoli, Via Vivaldi 43, I 81100, Caserta, Italy
    Plant Methods 9:21. 2013
    ....
  6. ncbi request reprint Dispatch. Intercellular signaling: an elusive player steps forth
    David Jackson
    Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA
    Curr Biol 13:R349-50. 2003
    ..A recent study has identified a specific protein that regulates the intercellular transport of macromolecules in plants, known as non-cell autonomous pathway protein 1...
  7. pmc Studies of aberrant phyllotaxy1 mutants of maize indicate complex interactions between auxin and cytokinin signaling in the shoot apical meristem
    Byeong Ha Lee
    Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
    Plant Physiol 150:205-16. 2009
    ..We propose that reduced auxin levels and PIN1 expression in abph1 mutant SAMs delay leaf initiation, contributing to the enlarged SAM and altered phyllotaxy of these mutants...
  8. doi request reprint Chaperonins facilitate KNOTTED1 cell-to-cell trafficking and stem cell function
    Xianfeng Morgan Xu
    Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
    Science 333:1141-4. 2011
    ..Our study shows that chaperonins are essential for the cell-to-cell trafficking of a subset of mobile transcription factors and demonstrates the importance of chaperonin-dependent protein trafficking for plant stem cell function...
  9. doi request reprint Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus
    Peter Bommert
    Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA
    Nat Genet 45:334-7. 2013
    ..These findings indicate that modulation of fundamental stem cell proliferation control pathways has the potential to enhance crop yields...
  10. doi request reprint Grass meristems I: shoot apical meristem maintenance, axillary meristem determinacy and the floral transition
    Michael Pautler
    Cold Spring Harbor Laboratory, 1 Bungtown Rd, Cold Spring Harbor, NY 11724, USA
    Plant Cell Physiol 54:302-12. 2013
    ..In an accompanying paper, Tanaka et al. review subsequent stages of shoot development, including current knowledge of reproductive meristem determinacy and the fate transitions associated with these meristems...
  11. ncbi request reprint Developmental regulation and significance of KNOX protein trafficking in Arabidopsis
    Jae Yean Kim
    Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
    Development 130:4351-62. 2003
    ..These results suggest that the activity of KN1 and related homeobox proteins is maintained following intercellular trafficking, and that trafficking may be required for their normal developmental function...
  12. pmc Pod corn is caused by rearrangement at the Tunicate1 locus
    Jong Jin Han
    Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
    Plant Cell 24:2733-44. 2012
    ..The Tu1 rearrangement is not found in ancestral teosinte and arose after domestication of maize...
  13. pmc Control of Arabidopsis meristem development by thioredoxin-dependent regulation of intercellular transport
    Yoselin Benitez-Alfonso
    Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
    Proc Natl Acad Sci U S A 106:3615-20. 2009
    ..We propose a role for the GAT1 thioredoxin in the redox regulation of callose deposition and symplastic permeability that is essential for meristem maintenance in Arabidopsis...
  14. doi request reprint The maize Gα gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size
    Peter Bommert
    Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
    Nature 502:555-8. 2013
    ....
  15. ncbi request reprint A trehalose metabolic enzyme controls inflorescence architecture in maize
    Namiko Satoh-Nagasawa
    Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, New York 11724, USA
    Nature 441:227-30. 2006
    ..Alternatively, the fact that RA3 acts upstream of RA1 supports a hypothesis that RA3 itself may have a transcriptional regulatory function...
  16. pmc Digital gene expression signatures for maize development
    Andrea L Eveland
    Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
    Plant Physiol 154:1024-39. 2010
    ..Results from this study provide a basis for the analysis of short-read expression data in maize and resolved specific expression signatures that will help define mechanisms of action for the RA3 gene...
  17. doi request reprint Signaling from maize organ primordia via FASCIATED EAR3 regulates stem cell proliferation and yield traits
    Byoung Il Je
    Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, New York, USA
    Nat Genet 48:785-91. 2016
    ..Furthermore, we demonstrate an application of this new signaling feedback, by showing that weak alleles of fea3 enhance hybrid maize yield traits. ..
  18. pmc A maize glutaredoxin gene, abphyl2, regulates shoot meristem size and phyllotaxy
    Fang Yang
    Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724
    Plant Cell 27:121-31. 2015
    ..In addition, MSCA1 interacts with a TGA transcription factor, FASCIATED EAR4, suggesting a novel regulatory module for regulating shoot meristem size. ..
  19. pmc Double labeling of KNOTTED1 mRNA and protein reveals multiple potential sites of protein trafficking in the shoot apex
    David Jackson
    Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
    Plant Physiol 129:1423-9. 2002
    ..The technique should be applicable to any gene products where the appropriate probes are available and will, therefore, help to determine the extent of protein and/or mRNA trafficking in plants...
  20. pmc The Relationship between auxin transport and maize branching
    Andrea Gallavotti
    Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
    Plant Physiol 147:1913-23. 2008
    ..Based on our results, we propose a general model for branching during maize inflorescence development...
  21. ncbi request reprint Genetics and evolution of inflorescence and flower development in grasses
    Peter Bommert
    Cold Spring Harbor Laboratory, 1 Bungtown Rd, Cold Spring Harbor, NY 11724, USA
    Plant Cell Physiol 46:69-78. 2005
    ..Progress in elucidating the developmental mechanisms in each of these plants may contribute greatly to our understanding of the evolution of development in higher plants...
  22. pmc Intercellular trafficking of a KNOTTED1 green fluorescent protein fusion in the leaf and shoot meristem of Arabidopsis
    Jae Yean Kim
    Cold Spring Harbor Laboratory, Watson School of Biological Sciences, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA
    Proc Natl Acad Sci U S A 99:4103-8. 2002
    ..GFP approximately KN1 also trafficked in the shoot apical meristem, suggesting that cell-to-cell trafficking of KN1 may be involved in its normal function in meristem initiation and maintenance...
  23. pmc FASCIATED EAR4 encodes a bZIP transcription factor that regulates shoot meristem size in maize
    Michael Pautler
    Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724
    Plant Cell 27:104-20. 2015
    ....
  24. pmc Regulatory modules controlling maize inflorescence architecture
    Andrea L Eveland
    Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
    Genome Res 24:431-43. 2014
    ....
  25. ncbi request reprint Plasmodesmata form and function
    Michelle Lynn Cilia
    Watson School of Biological Sciences, 1 Bungtown Road, Cold Spring Harbor, New York 11724, USA
    Curr Opin Cell Biol 16:500-6. 2004
    ....
  26. doi request reprint Lights at the end of the tunnel: new views of plasmodesmal structure and function
    Xianfeng Morgan Xu
    Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
    Curr Opin Plant Biol 13:684-92. 2010
    ..Moreover, many new developmental regulators, including transcription factors as well as small RNAs (sRNAs), have been found to be mobile and essential for specifying cell fate and tissue patterning...
  27. doi request reprint Illuminating plant biology: using fluorescent proteins for high-throughput analysis of protein localization and function in plants
    Stacy L DeBlasio
    Cold Spring Harbor Laboratory, NY 11724, USA
    Brief Funct Genomics 9:129-38. 2010
    ..In this review, we discuss how FP technology has evolved from small-scale analysis of individual genes to more high-throughput techniques for global expression and functional profiling in plants...
  28. ncbi request reprint thick tassel dwarf1 encodes a putative maize ortholog of the Arabidopsis CLAVATA1 leucine-rich repeat receptor-like kinase
    Peter Bommert
    Institut fur Entwicklungsbiologie, Universitat zu Koln, Gyrhofstrasse 17, D 50923 Köln, Germany
    Development 132:1235-45. 2005
    ..td1 maps in the vicinity of quantitative trait loci that affect seed row number, spikelet density and plant height. We discuss the possible selection pressures on td1 during maize domestication...
  29. pmc High-throughput fluorescent tagging of full-length Arabidopsis gene products in planta
    Guo Wei Tian
    Department of Biochemistry and Cell Biology, State University of New York, Stony Brook, New York 11794 5215, USA
    Plant Physiol 135:25-38. 2004
    ....
  30. pmc Analysis of the competence to respond to KNOTTED1 activity in Arabidopsis leaves using a steroid induction system
    Angela Hay
    Plant and Microbial Biology Department, University of California, Berkeley 94720, USA
    Plant Physiol 131:1671-80. 2003
    ..Primordia as old as plastochron 7 and as young as plastochron 2 were competent to respond to KN1...
  31. ncbi request reprint Systems toxicology: integrated genomic, proteomic and metabonomic analysis of methapyrilene induced hepatotoxicity in the rat
    Andrew Craig
    Biological Chemistry, Biomedical Sciences Division, Faculty of Life Sciences, Imperial College London, Sir Alexander Fleming Building, South Kensington, London SW7 2AZ, United Kingdom
    J Proteome Res 5:1586-601. 2006
    ..The difficulties of combining and interpreting multiomic data are considered...
  32. ncbi request reprint A 320-kilobase artificial chromosome encoding the human HLA DR3-DQ2 MHC haplotype confers HLA restriction in transgenic mice
    Zhenjun Chen
    Department of Microbiology and Immunology, University of Melbourne, Parkville, Victoria, Australia
    J Immunol 168:3050-6. 2002
    ..These findings demonstrate the potential for human MHC class II haplotypes to function efficiently in transgenic mice and should provide valuable tools for developing humanized models of MHC-associated autoimmune diseases...