Gautam Aggarwal

Summary

Affiliation: Seattle Biomedical Research Institute
Country: USA

Publications

  1. pmc Importing statistical measures into Artemis enhances gene identification in the Leishmania genome project
    Gautam Aggarwal
    Seattle Biomedical Research Institute 4 Nickerson Street, Seattle, WA 98109, USA
    BMC Bioinformatics 4:23. 2003
  2. pmc Patterns of gene recombination shape var gene repertoires in Plasmodium falciparum: comparisons of geographically diverse isolates
    Susan M Kraemer
    Seattle Biomedical Research Institute, 307 Westlake Avenue North, Suite 500, Seattle, WA 98109 5219, USA
    BMC Genomics 8:45. 2007
  3. pmc Leishmania major chromosome 3 contains two long convergent polycistronic gene clusters separated by a tRNA gene
    E A Worthey
    Seattle Biomedical Research Institute, 4 Nickerson Street, Seattle, WA 98109 1651, USA
    Nucleic Acids Res 31:4201-10. 2003
  4. ncbi Ab initio gene identification: prokaryote genome annotation with GeneScan and GLIMMER
    Gautam Aggarwal
    School of Physical Sciences, Jawaharlal Nehru University, New Delhi 110 067, India
    J Biosci 27:7-14. 2002
  5. ncbi Comparative genomics of trypanosomatid parasitic protozoa
    Najib M El-Sayed
    Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Science 309:404-9. 2005
  6. ncbi The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease
    Najib M El-Sayed
    Department of Parasite Genomics, Institute for Genomic Research, Rockville, MD 20850, USA
    Science 309:409-15. 2005
  7. pmc The genome of the kinetoplastid parasite, Leishmania major
    Alasdair C Ivens
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK
    Science 309:436-42. 2005

Collaborators

Detail Information

Publications7

  1. pmc Importing statistical measures into Artemis enhances gene identification in the Leishmania genome project
    Gautam Aggarwal
    Seattle Biomedical Research Institute 4 Nickerson Street, Seattle, WA 98109, USA
    BMC Bioinformatics 4:23. 2003
    ..At SBRI, chromosomal sequence is annotated using a combination of trained and untrained non-consensus gene-prediction algorithms with ARTEMIS, an annotation platform with rich and user-friendly interfaces...
  2. pmc Patterns of gene recombination shape var gene repertoires in Plasmodium falciparum: comparisons of geographically diverse isolates
    Susan M Kraemer
    Seattle Biomedical Research Institute, 307 Westlake Avenue North, Suite 500, Seattle, WA 98109 5219, USA
    BMC Genomics 8:45. 2007
    ....
  3. pmc Leishmania major chromosome 3 contains two long convergent polycistronic gene clusters separated by a tRNA gene
    E A Worthey
    Seattle Biomedical Research Institute, 4 Nickerson Street, Seattle, WA 98109 1651, USA
    Nucleic Acids Res 31:4201-10. 2003
    ..Numerous genes have been identified, including those for metabolic enzymes, kinases, transporters, ribosomal proteins, spliceosome components, helicases, an RNA-binding protein and a DNA primase subunit...
  4. ncbi Ab initio gene identification: prokaryote genome annotation with GeneScan and GLIMMER
    Gautam Aggarwal
    School of Physical Sciences, Jawaharlal Nehru University, New Delhi 110 067, India
    J Biosci 27:7-14. 2002
    ..This suggests that there could be some as-yet unidentified additional genes in these three genomes, and also that some of the putative identifications made hitherto might require re-evaluation. All these cases are discussed in detail...
  5. ncbi Comparative genomics of trypanosomatid parasitic protozoa
    Najib M El-Sayed
    Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Science 309:404-9. 2005
    ..Contrary to recent reports, our analyses reveal no evidence that these species are descended from an ancestor that contained a photosynthetic endosymbiont...
  6. ncbi The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease
    Najib M El-Sayed
    Department of Parasite Genomics, Institute for Genomic Research, Rockville, MD 20850, USA
    Science 309:409-15. 2005
    ....
  7. pmc The genome of the kinetoplastid parasite, Leishmania major
    Alasdair C Ivens
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK
    Science 309:436-42. 2005
    ..Abundant RNA-binding proteins are encoded in the Tritryp genomes, consistent with active posttranscriptional regulation of gene expression...