Japanese rice

Summary

Alias: Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa japonica, Oryza sativa subsp. japonica, Oryza sativa (japonica culticar-group), Oryza sativa (javanica cultivar-group), Oryza sativa Aromatic Japonica Group, Oryza sativa Temperate Japonica Group, Oryza sativa Tropical Japonica Group, Oryza sativa aromatic cultivar-group, Oryza sativa temperate japonica cultivar-group, Oryza sativa tropical japonica cultivar-group, Oryza sativa var. javanica, Oryza sativa var. javanica Koern.

Top Publications

  1. doi Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese
    Yasuhiro Ishimaru
    Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1 1 Yayoi, Bunkyo ku, Tokyo 113 8657, Japan
    Plant J 62:379-90. 2010
  2. pmc OsKu70 is associated with developmental growth and genome stability in rice
    Jong Pil Hong
    Department of Biology, College of Life Science and Biotechnology, Yonsei University, Seoul 120 749, Korea
    Plant Physiol 152:374-87. 2010
  3. pmc Characterization of SSIIIa-deficient mutants of rice: the function of SSIIIa and pleiotropic effects by SSIIIa deficiency in the rice endosperm
    Naoko Fujita
    Department of Biological Production, Akita Prefectural University, Akita City, Akita 010 0195, Japan
    Plant Physiol 144:2009-23. 2007
  4. doi Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana
    Ming Yan Cheung
    Department of Biology, The Chinese University of Hong Kong, Shatin, Hong Kong SAR
    J Exp Bot 58:4147-59. 2007
  5. ncbi Two novel genes rapidly and transiently activated in suspension-cultured rice cells by treatment with N-acetylchitoheptaose, a biotic elicitor for phytoalexin production
    E Minami
    Department of Cell Biology, National Institute of Agrobiological Resources, Japan
    Plant Cell Physiol 37:563-7. 1996
  6. pmc Targeting presequence acquisition after mitochondrial gene transfer to the nucleus occurs by duplication of existing targeting signals
    K Kadowaki
    National Institute of Agrobiological Resources, Department of Molecular Biology, Tsukuba, Ibaraki, Japan
    EMBO J 15:6652-61. 1996
  7. ncbi Two types of HKT transporters with different properties of Na+ and K+ transport in Oryza sativa
    T Horie
    Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916 5 Takayama cho, Ikoma shi, Nara 630 0101, Japan
    Plant J 27:129-38. 2001
  8. pmc LAX and SPA: major regulators of shoot branching in rice
    Keishi Komatsu
    Graduate School of Agriculture and Life Science, University of Tokyo, Yayoi 1 1 1, Bunkyo, Tokyo 113 8657, Japan
    Proc Natl Acad Sci U S A 100:11765-70. 2003
  9. ncbi OsEIN2 is a positive component in ethylene signaling in rice
    Sung Hoon Jun
    National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang, 790 784 Korea
    Plant Cell Physiol 45:281-9. 2004
  10. pmc Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling
    Yoshiaki Inukai
    Bioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi 464 8601, Japan
    Plant Cell 17:1387-96. 2005

Patents

  1. PLANTS HAVING ONE OR MORE ENHANCED YIELD-RELATED TRAITS AND A METHOD FOR MAKING THE SAME
  2. METHODS AND MEANS FOR INCREASING STRESS TOLERANCE AND BIOMASS IN PLANTS
  3. METHODS AND MEANS FOR INCREASING STRESS TOLERANCE AND BIOMASS IN PLANTS
  4. FUNCTIONAL MUTANT ALLELES OF EIN5 FOR YIELD INCREASE
  5. METHODS AND MEANS FOR INCREASING STRESS TOLERANCE AND BIOMASS IN PLANTS
  6. RICE PLANTS WITH ALTERED SEED PHENOTYPE AND QUALITY
  7. MODIFIED PLANTS
  8. A recombinant microorganism and a method for producing a product using the same
  9. A technology for regurating a flower formation of sugar cane
  10. Plants having one or more enhanced yield-related traits and a method for making the same

Detail Information

Publications196 found, 100 shown here

  1. doi Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese
    Yasuhiro Ishimaru
    Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1 1 Yayoi, Bunkyo ku, Tokyo 113 8657, Japan
    Plant J 62:379-90. 2010
    ..These results indicate that the altered expression of OsYSL2 changes the localization of Fe, and that OsYSL2 is a critical Fe-nicotianamine transporter important for Fe translocation, especially in the shoots and endosperm...
  2. pmc OsKu70 is associated with developmental growth and genome stability in rice
    Jong Pil Hong
    Department of Biology, College of Life Science and Biotechnology, Yonsei University, Seoul 120 749, Korea
    Plant Physiol 152:374-87. 2010
    ..1% (seven of 63) of G2 mutant anaphase cells displayed one or more chromosomal fusions. These results suggest that OsKu70 is required for the maintenance of chromosome stability and normal developmental growth in rice plants...
  3. pmc Characterization of SSIIIa-deficient mutants of rice: the function of SSIIIa and pleiotropic effects by SSIIIa deficiency in the rice endosperm
    Naoko Fujita
    Department of Biological Production, Akita Prefectural University, Akita City, Akita 010 0195, Japan
    Plant Physiol 144:2009-23. 2007
    ....
  4. doi Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana
    Ming Yan Cheung
    Department of Biology, The Chinese University of Hong Kong, Shatin, Hong Kong SAR
    J Exp Bot 58:4147-59. 2007
    ....
  5. ncbi Two novel genes rapidly and transiently activated in suspension-cultured rice cells by treatment with N-acetylchitoheptaose, a biotic elicitor for phytoalexin production
    E Minami
    Department of Cell Biology, National Institute of Agrobiological Resources, Japan
    Plant Cell Physiol 37:563-7. 1996
    ..Analyses of the sequence of the cDNAs showed that both of EL2 and EL3 encoded basic proteins with no significant similarities to those of known genes...
  6. pmc Targeting presequence acquisition after mitochondrial gene transfer to the nucleus occurs by duplication of existing targeting signals
    K Kadowaki
    National Institute of Agrobiological Resources, Department of Molecular Biology, Tsukuba, Ibaraki, Japan
    EMBO J 15:6652-61. 1996
    ....
  7. ncbi Two types of HKT transporters with different properties of Na+ and K+ transport in Oryza sativa
    T Horie
    Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916 5 Takayama cho, Ikoma shi, Nara 630 0101, Japan
    Plant J 27:129-38. 2001
    ..These results suggest that two isoforms of HKT transporters, a Na+ transporter (OsHKT1) and a Na+- and K+-coupled transporter (OsHKT2), may act harmoniously in the salt tolerant indica rice...
  8. pmc LAX and SPA: major regulators of shoot branching in rice
    Keishi Komatsu
    Graduate School of Agriculture and Life Science, University of Tokyo, Yayoi 1 1 1, Bunkyo, Tokyo 113 8657, Japan
    Proc Natl Acad Sci U S A 100:11765-70. 2003
    ..Ectopic LAX expression in rice caused pleiotropic effects, including dwarfing, an altered pattern of stem elongation, darker color, bending of the lamina joint, absence of the midribs of leaves, and severe sterility...
  9. ncbi OsEIN2 is a positive component in ethylene signaling in rice
    Sung Hoon Jun
    National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang, 790 784 Korea
    Plant Cell Physiol 45:281-9. 2004
    ..5 times more ethylene than the wild-type plants. Expression analysis of rice ACS and ACO genes showed that the transcript levels of OsACS1 and OsACO1 were elevated in the transgenic plants...
  10. pmc Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling
    Yoshiaki Inukai
    Bioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi 464 8601, Japan
    Plant Cell 17:1387-96. 2005
    ..We conclude that Crl1 encodes a positive regulator for crown and lateral root formation and that its expression is directly regulated by an ARF in the auxin signaling pathway...
  11. pmc A gibberellin-regulated calcineurin B in rice localizes to the tonoplast and is implicated in vacuole function
    Yong Sic Hwang
    Department of Plant and Microbial Biology, University of California, Berkeley, California 94720 3102, USA
    Plant Physiol 138:1347-58. 2005
    ..Data from experiments using antisense expression of OsCBL2 and HvCBL2 are consistent with a role for OsCBL2 in promoting vacuolation of barley aleurone cells following treatment with GA...
  12. ncbi Characterization of four RecQ homologues from rice (Oryza sativa L. cv. Nipponbare)
    Ai Saotome
    Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Noda shi, Chiba ken, Japan
    Biochem Biophys Res Commun 345:1283-91. 2006
    ....
  13. ncbi Biosynthesis and secretion of mugineic acid family phytosiderophores in zinc-deficient barley
    Motofumi Suzuki
    Department of Global Agricultural Sciences, Graduate School of Agricultural and Life Science, The University of Tokyo, Bunkyo ku, Tokyo 113 8657, Japan
    Plant J 48:85-97. 2006
    ..These data suggest that the increased biosynthesis and secretion of MAs arising from a shortage of Zn are not due to an induced Fe deficiency, and that secreted MAs are effective in absorbing Zn from the soil...
  14. pmc Conservation of the salt overly sensitive pathway in rice
    Juliana Martinez-Atienza
    Instituto de Recursos Naturales y Agrobiologia, Consejo Superior de Investigaciones Cientificas, Sevilla 41012, Spain
    Plant Physiol 143:1001-12. 2007
    ..These results demonstrate that the SOS salt tolerance pathway operates in cereals and evidences a high degree of structural conservation among the SOS proteins from dicots and monocots...
  15. doi Natural variation at the DEP1 locus enhances grain yield in rice
    Xianzhong Huang
    The State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, National Centre for Plant Gene Research, Beijing, China
    Nat Genet 41:494-7. 2009
    ..We also show that a functionally equivalent allele is present in the temperate cereals and seems to have arisen before the divergence of the wheat and barley lineages...
  16. doi MER3 is required for normal meiotic crossover formation, but not for presynaptic alignment in rice
    Kejian Wang
    State Key Laboratory of Plant Genomics and Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
    J Cell Sci 122:2055-63. 2009
    ..The normal loading of PAIR2 and REC8 in mer3 implies that their loading is independent of MER3. On the contrary, the absence of MER3 signal in pair2 mutants indicates that PAIR2 is essential for the loading and further function of MER3...
  17. pmc A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice
    Naoki Yamaji
    Research Institute for Bioresources, Okayama University, Kurashiki 710 0046, Japan
    Plant Cell 21:3339-49. 2009
    ..Our findings shed light on comprehensively understanding how plants detoxify aluminum to survive in an acidic environment...
  18. pmc The central element protein ZEP1 of the synaptonemal complex regulates the number of crossovers during meiosis in rice
    Mo Wang
    State Key Laboratory of Plant Genomics and Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
    Plant Cell 22:417-30. 2010
    ..In addition, ZEP1 is reloaded onto chromosomes in early microspores as the chromosome decondense, suggesting that ZEP1 might have other biological functions during this process...
  19. doi Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering
    Kazuki Matsubara
    National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305 8602, Japan
    Plant J 66:603-12. 2011
    ..Our results demonstrate that the PHD-finger gene Ehd3 acts as a promoter in the unique genetic pathway responsible for photoperiodic flowering in rice...
  20. doi A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice
    Chao Feng Huang
    Institute of Plant Science and Resources, Okayama University, Chuo 2 20 1, Kurashiki, Japan
    Plant J 69:857-67. 2012
    ..These results indicate that OsALS1 localized at the tonoplast is responsible for sequestration of Al into the vacuoles, which is required for internal detoxification of Al in rice...
  21. doi The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice
    Bai Xiao Niu
    State Key Laboratory for Conservation and Utilization of Subtropical Agro bioresources, College of Life Sciences, South China Agricultural University, Guangzhou 510642, China
    J Integr Plant Biol 55:710-20. 2013
    ..This work is helpful to understand the regulatory network in rice anther development. ..
  22. pmc Processing followed by complete editing of an altered mitochondrial atp6 RNA restores fertility of cytoplasmic male sterile rice
    M Iwabuchi
    Plantech Research Institute, Yokohama, Japan
    EMBO J 12:1437-46. 1993
    ....
  23. ncbi A unique sequence located downstream from the rice mitochondrial atp6 may cause male sterility
    H Akagi
    Plant Biotechnology Laboratory, Mitsui Toatsu Chemicals, Inc, Mobara, Japan
    Curr Genet 25:52-8. 1994
    ....
  24. ncbi Cloning and characterization of a probenazole-inducible gene for an intracellular pathogenesis-related protein in rice
    N Midoh
    Pharmaceutical Research Center, Meiji Seika Kaisha, Ltd, Yokohama, Japan
    Plant Cell Physiol 37:9-18. 1996
    ..Thus, although the accumulation of the PBZ1 mRNA was not fully correlated with anti-rice blast activity, our findings suggest that the PBZ1 gene has an important function during the disease resistance response in rice...
  25. pmc A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: common use of the same mitochondrial targeting signal for different proteins
    N Kubo
    Faculty of Horticulture, Chiba University, Matsudo 648, Matsudo, Chiba 271 0092, Japan
    Proc Natl Acad Sci U S A 96:9207-11. 1999
    ..The migration of the mitochondrial rps14 sequence into the already existing sdhB gene could bestow the capacity for nuclear expression and mitochondrial targeting...
  26. ncbi Phytochromes confer the photoperiodic control of flowering in rice (a short-day plant)
    T Izawa
    Laboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, Takayama, Ikoma, Nara 630 0101
    Plant J 22:391-9. 2000
    ..Comparison of se5 with hy1, a counterpart mutant of Arabidopsis, suggests distinct roles of phytochromes in the photoperiodic control of flowering in these two species...
  27. ncbi Identification of a cytoskeleton-associated 120 kDa RNA-binding protein in developing rice seeds
    R Sami-Subbu
    Institute of Biological Chemistry, Washington State University, Pullman 99164 6340, USA
    Plant Mol Biol 46:79-88. 2001
    ..The presence of a tudor domain, suggested to have a role in RNA processing or transport, together with the SN and coiled-coil domains are consistent with the view that Rp120 may be involved in RNA sorting in rice endosperm...
  28. ncbi Cell wall invertase in developing rice caryopsis: molecular cloning of OsCIN1 and analysis of its expression in relation to its role in grain filling
    Tatsuro Hirose
    Department of Rice Research, National Agricultural Research Center, Joetsu, Niigata, 943 0193 Japan
    Plant Cell Physiol 43:452-9. 2002
    ..These results suggest that, during the early stage of caryopsis development, OsCIN1 is important for supplying a carbon source to developing filial tissues by cleaving unloaded sucrose in the apoplast...
  29. ncbi EL5, a rice N-acetylchitooligosaccharide elicitor-responsive RING-H2 finger protein, is a ubiquitin ligase which functions in vitro in co-operation with an elicitor-responsive ubiquitin-conjugating enzyme, OsUBC5b
    Ryota Takai
    Institute of Applied Biochemistry, University of Tsukuba, 1 1 1 Tennoudai, Tsukuba, Ibaraki 305 8572, Japan
    Plant J 30:447-55. 2002
    ..These results strongly suggest that EL5 and OsUBC5b have roles in plant defense response through the turnover of protein(s) via the ubiquitin/proteasome system...
  30. ncbi Overexpression of RCN1 and RCN2, rice TERMINAL FLOWER 1/CENTRORADIALIS homologs, confers delay of phase transition and altered panicle morphology in rice
    Mayu Nakagawa
    Nara Institute of Science and Technology, Ikoma, Japan
    Plant J 29:743-50. 2002
    ....
  31. pmc The MSP1 gene is necessary to restrict the number of cells entering into male and female sporogenesis and to initiate anther wall formation in rice
    Ken ichi Nonomura
    Experimental Farm Plant Genetics Laboratory, National Institute of Genetics, Yata1111, Mishima, Shizuoka 411 8540, Japan
    Plant Cell 15:1728-39. 2003
    ..These results suggest that the MSP1 product plays crucial roles in restricting the number of cells entering into male and female sporogenesis and in initiating anther wall formation in rice...
  32. ncbi Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity
    Wei Liu
    National Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, China
    Plant J 36:189-202. 2003
    ..In OsCKI1-deficient plants, differential gene expression was investigated using cDNA chip technology, and results indicated that genes related to signal transduction and hormone metabolism were indeed with altered expression...
  33. ncbi The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm
    Masaya Murakami
    Laboratory of Molecular Microbiology, School of Agriculture, Nagoya University, Chikusa ku, Nagoya, 464 8601 Japan
    Plant Cell Physiol 44:1229-36. 2003
    ..thaliana. These and other results of this study suggested that the OsPRR quintet, including the ortholog of APRR1/TOC1, might play important roles within, or close to, the circadian clock of rice...
  34. ncbi Isolation and characterization of a novel rice Ca2+-regulated protein kinase gene involved in responses to diverse signals including cold, light, cytokinins, sugars and salts
    Kyung Nam Kim
    Department of Molecular Physiology, National Institute of Agricultural Biotechnology, Suweon 441 707, Korea
    Plant Mol Biol 52:1191-202. 2003
    ..These findings suggest that the CBL/CIPK or SCaBP/PKS signaling pathways recently found in Arabidopsis may also exist in rice and function in cold response in which calcium signal serves as a second messenger...
  35. ncbi OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem
    Shintaro Koike
    Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1 1 1 Yayoi, Bunkyo ku, Tokyo 113 8657, Japan
    Plant J 39:415-24. 2004
    ..These results suggest that OsYSL2 is a rice metal-NA transporter that is responsible for the phloem transport of iron and manganese, including the translocation of iron and manganese into the grain...
  36. ncbi Biological functions of ent- and syn-copalyl diphosphate synthases in rice: key enzymes for the branch point of gibberellin and phytoalexin biosynthesis
    Kazuko Otomo
    Course of the Science of Bioresources, The United Graduate School of Agricultural Science, Iwate University Yamagata University, Tsuruoka, Yamagata 997 8555, Japan
    Plant J 39:886-93. 2004
    ..Our results strongly suggest the presence of two ent-CDP synthase isoforms in rice, one that participates in the biosynthesis of GAs and a second that is involved in the biosynthesis of phytoalexins...
  37. pmc A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length
    Sumiyo Tanabe
    Fukui Prefectural University, Faculty of Bioscience, Kenjyojima, Matsuoka cho, Yoshida gun, Fukui 910 1195, Japan
    Plant Cell 17:776-90. 2005
    ..Multiple lines of evidence together suggest that the D11/CYP724B1 gene plays a role in BR synthesis and may be involved in the supply of 6-DeoxoTY and TY in the BR biosynthesis network in rice...
  38. pmc Functional characterization and expression analysis of a gene, OsENT2, encoding an equilibrative nucleoside transporter in rice suggest a function in cytokinin transport
    Naoya Hirose
    RIKEN The Institute of Physical and Chemical Research Plant Science Center, Tsurumi ku, Yokohama 230 0045, Japan
    Plant Physiol 138:196-206. 2005
    ....
  39. ncbi Essential amino acids of starch synthase IIa differentiate amylopectin structure and starch quality between japonica and indica rice varieties
    Yasunori Nakamura
    Akita Prefectural University, Akita City, Japan
    Plant Mol Biol 58:213-27. 2005
    ....
  40. pmc Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice
    Yoichi Morinaka
    Bioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi 464 8601, Japan
    Plant Physiol 141:924-31. 2006
    ..These results demonstrate the feasibility of generating erect-leaf plants by modifying the expression of the brassinosteroid receptor gene in transgenic rice plants...
  41. ncbi A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling
    Ke Duan
    Key Laboratory of Photosynthesis and Environmental Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, 20 Nanxincun Road, 100093 Beijing, China
    Plant J 47:519-31. 2006
    ....
  42. pmc Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor
    Hanae Kaku
    Department of Biochemistry, National Institute of Agrobiological Sciences, 2 1 2 Kannondai, Tsukuba, Ibaraki 305 8602, Japan
    Proc Natl Acad Sci U S A 103:11086-91. 2006
    ....
  43. ncbi The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds
    Junhuang Zou
    State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
    Plant J 48:687-98. 2006
    ..Characterization of MAX genes in Arabidopsis, and identification of their orthologs in pea, petunia and rice indicates the existence of a conserved mechanism for shoot-branching regulation in both monocots and dicots...
  44. pmc Wax-deficient anther1 is involved in cuticle and wax production in rice anther walls and is required for pollen development
    Ki Hong Jung
    National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang 790 784, Republic of Korea
    Plant Cell 18:3015-32. 2006
    ..Our findings provide new insights into the biochemical and developmental aspects of the role of waxes in microspore exine development in the tapetum as well as the role of epicuticular waxes in anther expansion...
  45. ncbi Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice
    Hiroaki Saika
    Laboratory of Plant Molecular Genetics, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1 1 1 Yayoi, Bunkyo ku, Tokyo, Japan
    Plant Cell Physiol 48:287-98. 2007
    ....
  46. ncbi RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice
    Hanae Koiwai
    Division of Plant Sciences, National Institute of Agrobiological Sciences, Kannondai, 2 1 2, Tsukuba, Ibaraki 305 8602, Japan
    Plant J 51:92-104. 2007
    ..In addition, we propose that EL5 is an unstable protein, of which degradation is regulated by the RFD in a proteasome-independent manner...
  47. ncbi Novel plant-specific cyclin-dependent kinase inhibitors induced by biotic and abiotic stresses
    Adrian Peres
    CropDesign N V, B 9052 Ghent, Belgium
    J Biol Chem 282:25588-96. 2007
    ..Orysa;EL2 mRNA levels were induced by cold, drought, and propionic acid. Our data suggest that Orysa;EL2 encodes a new type of plant CDK inhibitor that links cell cycle progression with biotic and abiotic stress responses...
  48. ncbi OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa
    Jiayi Tao
    Research Center for Molecular and Developmental Biology, Key Laboratory of Photosynthesis and Environmental Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, China
    Plant J 51:919-30. 2007
    ....
  49. ncbi Elicitor induced activation of the methylerythritol phosphate pathway toward phytoalexins biosynthesis in rice
    Atsushi Okada
    Biotechnology Research Center, The University of Tokyo, 1 1 1 Yayoi, Tokyo, Japan
    Plant Mol Biol 65:177-87. 2007
    ..These results suggest that activation of the MEP pathway is required to supply sufficient terpenoid precursors for the production of phytoalexins in infected rice plants...
  50. pmc A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice
    Ken ichi Nonomura
    Experimental Farm, National Institute of Genetics, Mishima, Shizuoka 411 8540, Japan
    Plant Cell 19:2583-94. 2007
    ....
  51. pmc The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants
    Takanori Kobayashi
    Laboratory of Plant Biotechnology, Graduate School of Agricultural and Life Sciences, University of Tokyo, 1 1 Yayoi, Bunkyo ku, Tokyo 113 8657, Japan
    Proc Natl Acad Sci U S A 104:19150-5. 2007
    ..Manipulation of IDEF1 also provides another approach for producing crops tolerant of iron deficiency to enhance food and biomass production in calcareous soils...
  52. doi A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants
    Yuko Ogo
    Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1 1 Yayoi, Bunkyo ku, Tokyo 113 8657, Japan
    J Biol Chem 283:13407-17. 2008
    ..IDEF2 bound to OsYSL2 promoter region containing the binding core site, suggesting direct regulation of OsYSL2 expression. These results reveal novel cis-element/trans-factor interactions functionally associated with iron homeostasis...
  53. pmc OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling
    Lei Wang
    Key Laboratory of Photosynthesis and Environmental Molecular Physiology, Institute of Botany, The Chinese Academy of Sciences, Beijing, China
    PLoS ONE 3:e3521. 2008
    ..It contains a novel conserved EELR domain among eukaryotes and displays transcriptional activation activity in yeast. OsLIC may be a transcription activator to control rice plant architecture...
  54. pmc OsFRDL1 is a citrate transporter required for efficient translocation of iron in rice
    Kengo Yokosho
    Research Institute for Bioresources, Okayama University, Kurashiki 710 0046, Japan
    Plant Physiol 149:297-305. 2009
    ..Taken together, our results indicate that OsFRDL1 is a citrate transporter localized at the pericycle cells, which is necessary for efficient translocation of Fe to the shoot as a Fe-citrate complex...
  55. pmc A bacterial-type ABC transporter is involved in aluminum tolerance in rice
    Chao Feng Huang
    Research Institute for Bioresources, Okayama University, Kurashiki 710 0046, Japan
    Plant Cell 21:655-67. 2009
    ..These results indicate that STAR1 and STAR2 form a complex that functions as an ABC transporter, which is required for detoxification of Al in rice. The ABC transporter transports UDP-glucose, which may be used to modify the cell wall...
  56. doi STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice
    Han Xiao
    State Key Laboratory of Plant Genomics and National Plant Gene Research Centre Beijing, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Datun Road, Chaoyang District, Beijing 100101, China
    Plant J 59:789-801. 2009
    ..The functional divergence between SL1 and JAG implies that SL1 was co-opted for its distinctive roles in specification of floral organ identity in rice after the lineage split from Arabidopsis...
  57. pmc OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints
    Takahiro Aoyama
    Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1 1 1 Yayoi, Bunkyo ku, Tokyo 113 8657, Japan
    Plant Mol Biol 70:681-92. 2009
    ..These results suggest that OsYSL18 is an iron-phytosiderophore transporter involved in the translocation of iron in reproductive organs and phloem in joints...
  58. pmc DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth
    Hao Lin
    State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
    Plant Cell 21:1512-25. 2009
    ..Our results demonstrate that D27 is involved in the MAX/RMS/D pathway, in which D27 acts as a new member participating in the biosynthesis of strigolactones...
  59. pmc ER membrane-localized oxidoreductase Ero1 is required for disulfide bond formation in the rice endosperm
    Yayoi Onda
    Division of Plant Sciences, National Institute of Agrobiological Sciences, 2 1 2 Kannondai, Tsukuba, Ibaraki 305 8602, Japan
    Proc Natl Acad Sci U S A 106:14156-61. 2009
    ..Together, we propose that the formation of native disulfide bonds in proglutelins depends on an electron transfer pathway involving OsEro1 and OsPDIL...
  60. doi OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice
    Fang Liu
    State Key Laboratory of Plant Physiology and Biochemistry, College of Life Science, Zhejiang University, Hangzhou 310058, China
    Plant J 62:508-17. 2010
    ..This finding provides new insight into the regulatory mechanism of Pi uptake, translocation, allocation and homeostasis in plants...
  61. pmc The bacterial pathogen Xanthomonas oryzae overcomes rice defenses by regulating host copper redistribution
    Meng Yuan
    National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research Wuhan, Huazhong Agricultural University, Wuhan 430070, China
    Plant Cell 22:3164-76. 2010
    ..The involvement of XA13 in copper redistribution has led us to propose a mechanism of bacterial virulence...
  62. doi Fatty acid elongase is required for shoot development in rice
    Yukihiro Ito
    Graduate School of Agricultural Science, Tohoku University, 1 1 Tsutsumidori Amamiyamachi, Aoba ku, Sendai 981 8555, Japan
    Plant J 66:680-8. 2011
    ..These results show that fatty acid elongase is required for formation of the outermost cell layer, and this layer is indispensable for entire shoot development in rice...
  63. doi An Al-inducible MATE gene is involved in external detoxification of Al in rice
    Kengo Yokosho
    Institute of Plant Science and Resources, Okayama University, Chuo 2 20 1, Kurashiki 710 0046, Japan
    Plant J 68:1061-9. 2011
    ..Taken together, our results show that OsFRDL4 is an Al-induced citrate transporter localized at the plasma membrane of rice root cells and is one of the components of high Al tolerance in rice...
  64. pmc LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems
    Hiroaki Tabuchi
    Crop Development Division, National Agriculture and Food Research Organization Agricultural Research Center, Niigata 943 0193, Japan
    Plant Cell 23:3276-87. 2011
    ..LAX2 encodes a nuclear protein that contains a plant-specific conserved domain and physically interacts with LAX1. We propose that LAX2 is a novel factor that acts together with LAX1 in rice to regulate the process of AM formation...
  65. doi A plastid protein NUS1 is essential for build-up of the genetic system for early chloroplast development under cold stress conditions
    Kensuke Kusumi
    Department of Biology, Kyushu University, Fukuoka 812 8581, Japan
    Plant J 68:1039-50. 2011
    ..Our results suggest that NUS1 is involved in the regulation of chloroplast RNA metabolism and promotes the establishment of the plastid genetic system during early chloroplast development under cold stress conditions...
  66. pmc Positive autoregulation of a KNOX gene is essential for shoot apical meristem maintenance in rice
    Katsutoshi Tsuda
    Genetic Strains Research Center, National Institute of Genetics, Mishima, Shizuoka, Japan
    Plant Cell 23:4368-81. 2011
    ..Thus, the maintenance of the indeterminate state mediated by positive autoregulation of a KNOX gene is an indispensable mechanism of self-maintenance of the SAM...
  67. pmc Ethanol-induced attenuation of oxidative stress is unable to alter mRNA expression pattern of catalase, glutathione reductase, glutathione-S-transferase (GST1A), and superoxide dismutase (SOD3) enzymes in Japanese rice fish (Oryzias latipes) embryogenesis
    Minghui Wu
    National Center for Natural Product Research, School of Pharmacy, University of Mississippi, MS 38677, USA
    Comp Biochem Physiol C Toxicol Pharmacol 153:159-67. 2011
    Although the mechanism of ethanol toxicity during embryogenesis is unknown, our earlier studies on Japanese rice fish (Oryzias latipes) embryos indicated that the effects might be mediated through oxidative stress...
  68. doi In silico analysis of cis-acting regulatory elements in 5' regulatory regions of sucrose transporter gene families in rice (Oryza sativa Japonica) and Arabidopsis thaliana
    Omodele Ibraheem
    Plant Stress Response Group, Department of Biochemistry and Microbiology, University of Fort Hare, Private Bag X1314, Alice 5700, South Africa
    Comput Biol Chem 34:268-83. 2010
    ..elements present within the 5' regulatory region of the sucrose transporter gene families in rice (Oryza sativa Japonica cultivar-group) and Arabidopsis thaliana, were identified using a bioinformatics approach...
  69. doi Gene structure dynamics and divergence of the polygalacturonase gene family of plants and fungus
    K C Park
    Department of Biology, McGill University, Montreal, QC H3A 1B1, Canada
    Genome 51:30-40. 2008
    ..The results obtained show that differential losses of introns created gene diversity, which was followed by segmental and tandem duplication in plant PGs...
  70. doi Analysis of CMP-sialic acid transporter-like proteins in plants
    Shou Takashima
    Glyco chain Functions Laboratory, RIKEN FRS, 2 1 Hirosawa, Wako, Saitama 351 0198, Japan
    Phytochemistry 70:1973-81. 2009
    ..To elucidate the physiological functions of these genes, we cloned 2 cDNAs from Oryza sativa (Japanese rice), each of which encodes a CMP-sialic acid transporter-like protein designated as OsCSTLP1 and OsCSTLP2...
  71. pmc Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms
    Toshio Yamamoto
    QTL Genomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
    BMC Genomics 11:267. 2010
    ..Here, we used a high-throughput sequencer to conduct whole-genome sequencing of an elite Japanese rice cultivar, Koshihikari, which is closely related to Nipponbare, whose genome sequencing has been completed...
  72. ncbi Relationship between the preference for sake (Japanese rice wine) and the movements of metabolic parameters coinciding with sake intake
    Yasuko Manabe
    National Research Institute of Brewing, Kagamiyama, Higashi Hiroshima, Japan
    Biosci Biotechnol Biochem 68:796-802. 2004
    ..In this paper, we reported how physiological changes in rats after ingestion of sake (Japanese rice wine) affected their preference for different kinds of sake...
  73. doi Novel cyanophage photosynthetic gene psbA in the floodwater of a Japanese rice field
    Guanghua Wang
    Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan
    FEMS Microbiol Ecol 70:79-86. 2009
    ..In this study, viral concentrates were prepared by sampling the floodwaters from each of four plots in a Japanese rice field: (1) no fertilizer; (2) P and K chemical fertilizers; (3) N, P and K chemical fertilizers; and (4) ..
  74. ncbi Multiple TPR motifs characterize the Fanconi anemia FANCG protein
    Eric Blom
    Department of Clinical Genetics and Human Genetics, VU University Medical Center, Van der Boechorststraat 7, NL 1081 BT, Amsterdam, The Netherlands
    DNA Repair (Amst) 3:77-84. 2004
    ..search strategy comparing the human FANCG protein sequence with its ortholog sequences in Oryzias latipes (Japanese rice fish) and Danio rerio (zebrafish) we identified at least seven tetratricopeptide repeat motifs (TPRs) covering ..
  75. pmc Evolutionary dynamics of the DNA-binding domains in putative R2R3-MYB genes identified from rice subspecies indica and japonica genomes
    Li Jia
    Department of Biological Sciences, Wichita State University, Wichita, Kansas 67260, USA
    Plant Physiol 134:575-85. 2004
    ..This points to the functional importance of pairing interactions between related secondary structures...
  76. doi Delimitation of the PSH1(t) gene for rice purple leaf sheath to a 23.5 kb DNA fragment
    Wen Ying Wang
    High Tech Research Center, Shandong Academy of Agricultural Science, Jinan 250100, P R China
    Genome 52:268-74. 2009
    ..The detailed genetic and physical maps of the PSH1(t) locus will be very useful in molecular cloning of the PSH1(t) gene...
  77. doi Characterization of rice nucleotide sugar transporters capable of transporting UDP-galactose and UDP-glucose
    Junichi Seino
    Glyco chain Functions Laboratory, RIKEN FRS, 2 1 Hirosawa, Wako, Saitama 351 0198, Japan
    J Biochem 148:35-46. 2010
    Using the basic local alignment search tool (BLAST) algorithm to search the Oryza sativa (Japanese rice) nucleotide sequence databases with the Arabidopsis thaliana UDP-galactose transporter sequences as queries, we found a number of ..
  78. ncbi Ontogenetic dietary shift in the larvae of Cybister japonicus (Coleoptera: Dytiscidae) in Japanese rice fields
    Shin Ya Ohba
    Laboratory of Insect Ecology and Laboratory of Evolutionary Ecology, Graduate School of Environmental Science, Okayama University, Tsushima, Okayama 700 8530, Japan
    Environ Entomol 38:856-60. 2009
    ..These results suggested that the first- and second-instar larvae of C. japonicus prey mainly on insects and do not eat vertebrate animals (insectivore), whereas the third-instar larvae fed on both insects and vertebrates (generalist)...
  79. doi Effects of water management on cadmium and arsenic accumulation and dimethylarsinic acid concentrations in Japanese rice
    Tomohito Arao
    National Institute for Agro Environmental Sciences, Kannondai 3 1 3, Tsukuba, Ibaraki, 305 8604, Japan
    Environ Sci Technol 43:9361-7. 2009
    ..We investigated the effects of water management in rice paddy on levels of cadmium and arsenic in Japanese rice grains...
  80. ncbi QTL analysis for flowering time using backcross population between Oryza sativa Nipponbare and O. rufipogon
    Pham Thien Thanh
    Laboratory of Plant Breeding, Graduate School of Agricultural Science, Kobe University, Nada Ku, Kobe 657 8501, Japan
    Genes Genet Syst 85:273-9. 2010
    ..conditions by comparing an Asian wild rice accession of Oryza rufipogon W630 (originated from Myanmar) with a Japanese rice cultivar, O. sativa Japonica cv. Nipponbare...
  81. pmc Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa
    Jason P Londo
    Department of Biology, Washington University, St Louis, MO 63130, USA
    Proc Natl Acad Sci U S A 103:9578-83. 2006
    ..of these two independent domestication events are the two major rice varieties, Oryza sativa indica and Oryza sativa japonica. Based on this geographical analysis, O...
  82. ncbi Molecular characterization of T4-type bacteriophages in a rice field
    Zhongjun Jia
    Laboratory of Soil Biology and Chemistry, Graduate School of Bioagricultural Sciences, Nagoya University, Furocho, Chikusa, Nagoya 464 8601, Japan
    Environ Microbiol 9:1091-6. 2007
    ..a remarkable level of diversity of T4-type bacteriophages isolated from rice straw and surface soil in a Japanese rice field...
  83. ncbi Characterization of a lipoate-protein ligase A gene of rice (Oryza sativa L.)
    Sang Gu Kang
    School of Biotechnology, Institute of Biotechnology, Yeungnam University, Gyeongsan 712 749, Republic of Korea
    Gene 393:53-61. 2007
    ..encoded 270 amino acids, was located on an approximately 21 Mb of chromosome 8 on the physical map of Oryza sativa Japonica type. OsLPLA transcripts were abundantly expressed in leaves and developing seeds...
  84. doi Genetic diversity and evolutionary relationships in genus Oryza revealed by using highly variable regions of chloroplast DNA
    Masahiko Kumagai
    Department of Biological Sciences, Graduate School of Science, University of Tokyo, 7 3 1 Hongo, Bunkyo ku, Tokyo 113 0033, Japan
    Gene 462:44-51. 2010
    ..species with fine resolution and high reliability, we first compared the complete chloroplast sequences of Oryza sativa japonica, O. sativa indica, and O. nivara, and identified regions containing many variant sites...
  85. ncbi Fluorogenic ribonuclease protection (FRIP) analysis of single nucleotide polymorphisms (SNPs) in Japanese Rice (Oryza sativa L.) DNA for cultivar discrimination
    Momoko Kitaoka
    Department of Applied Chemistry, Graduate School of Engineering, Kyushu University, Fukuoka, Japan
    Biosci Biotechnol Biochem 74:2189-93. 2010
    ..We established a fluorogenic ribonuclease protection (FRIP) assay to discriminate Japanese rice (Oryza sativa L.) cultivars based on single nucleotide polymorphisms (SNPs)...
  86. pmc Analyses of advanced rice anther transcriptomes reveal global tapetum secretory functions and potential proteins for lipid exine formation
    Ming Der Huang
    Institute of Plant and Microbial Biology, Academia Sinica, 11529 Taipei, Taiwan
    Plant Physiol 149:694-707. 2009
    ..Putative functioning of these proteins in exine formation is consistent with proteins and metabolites detected in the anther locule fluid obtained by micropipetting...
  87. ncbi Direct electrical power generation from urine, wastes and biomass with simultaneous photodecomposition and cleaning
    Masao Kaneko
    Faculty of Science, Ibaraki University, 2 1 1 Bunkyo, Mito 310 8512, Japan
    Biosens Bioelectron 23:140-3. 2007
    ..As trials of various biomass materials, Coca-Cola (to test colored sample), Japanese rice wine (to test alcohol aqueous solution), and grated radish (to test slurry state sample) also generated ..
  88. doi Habitat use in irrigation channels by the golden venus chub (Hemigrammocypris rasborella) at different growth stages
    Norio Onikura
    Fishery Research Laboratory, Kyushu University, 2506 Tsuyazaki, Fukutsu, Fukuoka 811 3304, Japan
    Zoolog Sci 26:375-81. 2009
    ..These results suggest that maintenance of the water level in the fallow season and not using concrete revetments are essential for the conservation of this species under the present conditions in Japanese rice fields.
  89. ncbi Identification of target genes conferring ethanol stress tolerance to Saccharomyces cerevisiae based on DNA microarray data analysis
    Takashi Hirasawa
    Department of Biotechnology, Graduate School of Engineering, Osaka University, 2 1 Yamadaoka, Suita, Osaka, Japan
    J Biotechnol 131:34-44. 2007
    ..profiles of two strains of Saccharomyces cerevisiae, namely, a laboratory strain and a strain used for brewing Japanese rice wine (sake), in the presence of 5% (v/v) ethanol, using DNA microarray...
  90. pmc In vivo bactericidal activities of Japanese rice-fluid against H. pylori in a Mongolian gerbil model
    Satoshi Ishizone
    Department of Surgery, Shinshu University School of Medicine, Matsumoto, Japan
    Int J Med Sci 4:203-8. 2007
    ..The antibiotic effect of rice-fluid on Helicobacter pylori infection was investigated using a Mongolian gerbil model...
  91. ncbi Genetic analysis and molecular mapping of a nuclear recessive male sterility gene, ms91(t), in rice
    Xia Liu
    Biology Department, Nankai University, Tianjin, China
    Genome 50:796-801. 2007
    ..Subsequently, ms91(t) was fine-mapped to the interval between markers RM7075 (3.75 cM) and RM5638 (3.57 cM). Our results would facilitate the isolation of ms91(t) and male sterility in heterosis application...
  92. doi Systematic identification of X1-homologous genes reveals a family involved in stress responses in rice
    Yonghua Qin
    National Center of Plant Gene Research Wuhan, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070 Wuhan, China
    Plant Mol Biol 71:483-96. 2009
    ..Eleven putative XHS protein sequences (OXHS1-11) were identified in the sequenced genome of Oryza sativa japonica cv...
  93. ncbi Immunomodulating activities in bran extracts of Japanese red, black and brown rices
    Yasuji Okai
    Department of Human Life Science, Osaka Kun Ei Women s College, Sets City, Osaka 566 8501, Japan
    J UOEH 31:231-42. 2009
    To determine the potent immunomodulating activities of different types of Japanese rice bran, we analyzed the effects of extracts of red, brown and black rice brans on the cell proliferation and cytokine production of mouse ..
  94. pmc Isolation and characterization of a novel facultative anaerobic filamentous fungus from Japanese rice field soil
    Akio Tonouchi
    Faculty of Agriculture and Life Science, Hirosaki University, 3 Bunkyo cho, Hirosaki, Aomori 036 8561, Japan
    Int J Microbiol 2009:571383. 2009
    A novel filamentous fungus strain designated RB-1 was isolated into pure culture from Japanese rice field soil through an anaerobic role tube technique...
  95. doi Amelioration of experimental autoimmune encephalitis by novel peptides: involvement of T regulatory cells
    Elena Shapira
    Institute of Drug Research, School of Pharmacy, Faculty of Medicine, Institute of Life Sciences, The Hebrew University, POB 12065, 91120 Jerusalem, Israel
    J Autoimmun 35:98-106. 2010
    ..Stimulation of Tregs by IIIM1 caused production of a new peptide termed RA1 present in Oryza Sativa Japonica group. This Japanese rice peptide ameliorated neurological symptoms in the EAE model...
  96. pmc Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants
    Hirofumi Nakagami
    RIKEN Plant Science Center, Tsurumi ku, Yokohama 230 0045, Japan
    Plant Physiol 153:1161-74. 2010
    ..Here, we report a large-scale phosphoproteome analysis in the model monocot rice (Oryza sativa japonica 'Nipponbare'), an economically important crop...
  97. ncbi [Analysis of 27 mineral elements in the rice samples collected from China and Japan by using ICP-OES and ICP-MS]
    Xiao Ping Wang
    School of Radioactive Medicine and Public Hygiene, Soochow University, Suzhou 215123, China
    Guang Pu Xue Yu Guang Pu Fen Xi 30:2260-4. 2010
    ..Fe, Hg, K, Mg, Mn, Mo, Na, Ni, P, Pb, Rb, S, Se, Sr, T1, V and Zn in sixteen Chinese rice samples and eleven Japanese rice samples were analysed by using ICP-OES and ICP-MS, and a biological standard reference material rice (GBW10010)..
  98. ncbi Isolation, characterization and expression of the human Factor In the Germline alpha (FIGLA) gene in ovarian follicles and oocytes
    J Huntriss
    Academic Unit of Paediatrics, Obstetrics and Gynaecology, University of Leeds, D Floor, Clarendon Wing, Leeds General Infirmary, Belmont Grove, Leeds LS2 9NS, UK
    Mol Hum Reprod 8:1087-95. 2002
    ..with the mouse Figla gene sequence, and homology on translation with the FIGalpha protein identified in the Japanese rice fish, medaka (Oryzias latipes)...
  99. ncbi Characterization of Rat8 localization and mRNA export in Saccharomyces cerevisiae during the brewing of Japanese sake
    Shingo Izawa
    Laboratory of Molecular Microbiology, Graduate School of Agriculture, Kyoto University, Uji, Kyoto 611 0011, Japan
    Appl Microbiol Biotechnol 69:86-91. 2005
    ..Here, we characterize the localization of Rat8 and bulk poly(A)(+) mRNA in sake (Japanese rice wine) yeast during the brewing of sake...
  100. ncbi Different patterns of genealogical relationships found in the two major QTLs causing reduction of seed shattering during rice domestication
    Kazumitsu Onishi
    Plant Breeding Laboratory, Department of Applied Science, Graduate School of Agriculture, Hokkaido University, Sapporo 060 8589, Japan
    Genome 50:757-66. 2007
    ..The 2 subspecies formed a single clade with respect to qSH4, whereas they were separated into different lineages with respect to qSH1, suggesting that these loci had different histories during rice domestication...
  101. doi Lipid hydroperoxides in human plasma after ethanol consumption
    Migiwa Asano
    Division of Legal Medicine, Department of Social Medicine, Kobe University Graduate School of Medicine, 7 5 1 Kusunoki cho, Chuo Ku, Kobe 650 0017, Japan
    Leg Med (Tokyo) 11:S223-5. 2009
    ..Blood was collected from healthy volunteers before, 1 h, and 3 h after drinking 400 ml of Japanese rice wine at the rate of 100 ml per 5 min...

Research Grants4

  1. Ethanol action in Japanese medaka: Alteration in specific gene methylation
    ASOK DASMAHAPATRA; Fiscal Year: 2008
    ..In this proposal, we have focused on an ethanol-induced epigenetic event as the major cause of Fetal Alcohol Syndrome and evaluate a natural product as the preventive agent for FAS. [unreadable] [unreadable] [unreadable]..
  2. 2007 Epigenetics Gordon Research Conference
    Steven Jacobsen; Fiscal Year: 2007
    ..Perhaps equally importantly, it will launch the careers of new scientists in this frontier area. [unreadable] [unreadable] [unreadable]..
  3. Genetics of DNA Methylation Patterning of Arabidopsis
    Steven Jacobsen; Fiscal Year: 2008
    ....
  4. A Modular Approach for Combinatorial Biosynthesis of Functionalized Terpenoids
    REUBEN JOHN PETERS; Fiscal Year: 2010
    ..Bacterial production will provide an effective source for production of the larger amounts of these natural products necessary for detailed investigation of their promising biological activity. ..

Patents55

  1. PLANTS HAVING ONE OR MORE ENHANCED YIELD-RELATED TRAITS AND A METHOD FOR MAKING THE SAME
    Patent Number: EP3011038-A2; Date:2016-04-27
  2. METHODS AND MEANS FOR INCREASING STRESS TOLERANCE AND BIOMASS IN PLANTS
    Patent Number: WO2016050509-A1; Date:2016-04-07
  3. METHODS AND MEANS FOR INCREASING STRESS TOLERANCE AND BIOMASS IN PLANTS
    Patent Number: WO2016050511-A1; Date:2016-04-07
  4. FUNCTIONAL MUTANT ALLELES OF EIN5 FOR YIELD INCREASE
    Patent Number: WO2016050984-A1; Date:2016-04-07
  5. METHODS AND MEANS FOR INCREASING STRESS TOLERANCE AND BIOMASS IN PLANTS
    Patent Number: WO2016050510-A2; Date:2016-04-07
  6. RICE PLANTS WITH ALTERED SEED PHENOTYPE AND QUALITY
    Patent Number: WO2016124920-A1; Date:2016-08-11
  7. MODIFIED PLANTS
    Patent Number: EP3060665-A1; Date:2016-08-31
  8. A recombinant microorganism and a method for producing a product using the same
    Patent Number: JP2015226476-A; Date:2015-12-17
  9. A technology for regurating a flower formation of sugar cane
    Patent Number: JP2014003917-A; Date:2014-01-16
  10. Plants having one or more enhanced yield-related traits and a method for making the same
    Patent Number: EP2816115-A1; Date:2014-12-24
  11. No title supplied
    Patent Number: WO2006013010-A2; Date:2006-02-09
  12. Plant transcriptional regulators
    Patent Number: WO2005047516-A2; Date:2005-05-26
  13. No title supplied
    Patent Number: WO2006056468-A1; Date:2006-06-01
  14. Plants having enhanced yield-related traits and a method for making the same
    Patent Number: EP2677035-A1; Date:2013-12-25
  15. REGULATION OF SEED DORMANCY
    Patent Number: WO2013190322-A1; Date:2013-12-27
  16. Nucleic acid molecules encoding polypeptides involved in regulation of sugar and lipid metabolism and methods of use VIII
    Patent Number: EP2500422-A2; Date:2012-09-19
  17. Nucleic acid molecules encoding polypeptides involved in regulation of sugar and lipid metabolism and methods of use VIII
    Patent Number: EP2522722-A2; Date:2012-11-14
  18. Polypeptides involved in regulation of sugar and lipid metabolism and methods of use VIII
    Patent Number: EP2314607-A1; Date:2011-04-27
  19. Use of stomatin (stm1) polynucleotides for achieving a pathogen resistance in plants
    Patent Number: WO2007080143-A1; Date:2007-07-19
  20. A novel plant gene family Pcr that confers tolerance to heavymetal and organism transformed with any Pcr genes
    Patent Number: KR1020030058299-A; Date:2003-08-22
  21. PRODUCTION OF RECOMBINANT PROTEINS AT HIGH LEVEL UNDER THECONDITION OF MINIMIZED PROTEASE ACTIVITY
    Patent Number: KR1020030099288-A; Date:2003-12-29
  22. promoter
    Patent Number: JP2008154496-A; Date:2008-07-10
  23. A method of preparing a heteroprotein
    Patent Number: WO2009020144-A; Date:2009-02-12
  24. Proteins associated with abiotic stress response and homologs
    Patent Number: WO2007110314-A; Date:2007-10-04
  25. Plants having improved growth characteristics and method for making the same
    Patent Number: WO2007141189-A; Date:2007-12-13
  26. Process for the production of a fine chemical
    Patent Number: WO2008034648-A1; Date:2008-03-27
  27. A method of preparing a heteropolypeptide
    Patent Number: WO2010084947-A; Date:2010-07-29
  28. Nucleic acids compositions conferring dwarfing phenotype
    Patent Number: WO0208410-A; Date:2002-01-31
  29. Methods of creating dwarf phenotypes in plants
    Patent Number: WO0208411-A; Date:2002-01-31
  30. Process for the production of fine chemicals
    Patent Number: EP2194140-A2; Date:2010-06-09
  31. Plant cells and plants with increased tolerance and/or resistance to environmental stress and increased biomass production-ko
    Patent Number: WO2008142036-A2; Date:2008-11-27
  32. Plants with increased yield
    Patent Number: WO2009037279-A1; Date:2009-03-26
  33. Plants with increased yield
    Patent Number: WO2009037329-A2; Date:2009-03-26
  34. Plants with increased yield and/or increased tolerance to environmental stress (iy-bm)
    Patent Number: WO2009077611-A2; Date:2009-06-25
  35. Process for the production of fine chemicals
    Patent Number: EP2080769-A2; Date:2009-07-22
  36. None
    Patent Number: WO2009080743-A2; Date:2009-07-02
  37. Process for the production of a fine chemical
    Patent Number: EP2090662-A2; Date:2009-08-19
  38. Process for the production of lutein
    Patent Number: EP2096177-A2; Date:2009-09-02
  39. Plants with increased yield by increasing or generating one or more activities in a plant or a part thereof
    Patent Number: WO2010020654-A2; Date:2010-02-25
  40. Plants with increased yield (lt)
    Patent Number: WO2010034672-A1; Date:2010-04-01
  41. Method for producing a transgenic plant cell, a plant or a part thereof with increased resistance biotic stress
    Patent Number: WO2010037714-A1; Date:2010-04-08
  42. Plants with increased yield (nue)
    Patent Number: WO2010046221-A1; Date:2010-04-29
  43. METHODS AND COMPOSITIONS FOR PLANT IMPROVEMENT
    Patent Number: EP2294198-A1; Date:2011-03-16
  44. Process for the control of production of fine chemicals
    Patent Number: EP2199304-A1; Date:2010-06-23
  45. A method for increasing GGT activity in plant, a plant having increased GGT activity and a medhod of producing the plant
    Patent Number: WO2004014128-A; Date:2004-02-19
  46. Proteins associated with abiotic stress response and homologs
    Patent Number: EP2221382-A2; Date:2010-08-25
  47. Drought and heat tolerance in plants
    Patent Number: EP2255003-A2; Date:2010-12-01
  48. ANTIFUNGAL PROTEINS, DNA CODING THEREFORE, AND HOSTS INCORPORATING SAM
    Patent Number: WO9813478-A2; Date:1998-04-02
  49. A primer set for distinguishing the origins of the rice variety Koshihikari landraces and a method to distinguish the origins of the Koshihikari landraces
    Patent Number: JP2011193799-A; Date:2011-10-06
  50. RNA OR DNA SUPPRESSING EXPRESSION OF ALPHA-AMYLASE GENE, AND USE THEREOF
    Patent Number: JP2013208076-A; Date:2013-10-10
  51. A technology for regurating a flower formation of sugar cane
    Patent Number: WO2013190720-A; Date:2013-12-27
  52. Polypeptides involved in regulation of sugar and lipid metabolism and methods of use VIII
    Patent Number: EP2311856-A1; Date:2011-04-20
  53. polypeptides involved in regulation of sugar and lipid metabolism and methods of use VIII
    Patent Number: EP2311857-A1; Date:2011-04-20
  54. Nucleic acid molecules encoding polypeptides involved in regulation of sugar and lipid metabolism and methods of use VIII
    Patent Number: EP2314606-A1; Date:2011-04-27
  55. Plants with increased tolerance and/or resistance to environmental stress and increased biomass production
    Patent Number: WO2008142034-A2; Date:2008-11-27